Osativa ChrSy.fgenesh.gene.47

From GreeNC


Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Assembly Species Details

Osativa_ChrSy.fgenesh.gene.47
[ ChrSy.fgenesh.gene.47]
ChrSy 320295 320612 v7 Oryza sativa (Phytozome 13)
Coding?
No


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Orthologous group Sequence Details

Osativa_ChrSy.fgenesh.mRNA.47
ChrSy.fgenesh.mRNA.47
Low No 318 OG0001767
Coding potential...
Type: coding Potential: 0.057
Folding energies...
MFEI: -40.314 AMFE: -0.613
GC content
%: 65.723


Matches to external databases
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The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias Database Version Hit Evalue
Osativa_ChrSy.fgenesh.mRNA.47  RepBase (RepeatMasker) 2014-01-31 LTR/Gypsy


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

Osativa_ChrSy.fgenesh.gene.47.png