Pvera EVM0000276

From GreeNC

Revision as of 18:21, 14 September 2021 by Maintenance script (Talk | contribs)

(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)


Gene information
Help.png

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Assembly Species Details

Pvera_EVM0000276
[ EVM0000276]
Contig31 1310630 1326529 v2 Pistacia vera (Ensembl Plants 51)
Coding?
No


Transcript features
Help.png

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Orthologous group Sequence Details

Pvera_EVM0000276.1
EVM0000276.1
High No 354 OG0287840
Coding potential...
Type: noncoding Potential: -0.626
Folding energies...
MFEI: -21.723 AMFE: -0.538
GC content
%: 40.395


Gene models
Help.png

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

Pvera_EVM0000276.png