Pvirgatum Pavir.1KG016000
From GreeNC
Revision as of 19:29, 14 September 2021 by Maintenance script (Talk | contribs)
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Pvirgatum_Pavir.1KG016000 [ Pavir.1KG016000] |
Chr01K | 1591306 | 1591900 | v5.1 | Panicum virgatum (Phytozome 13) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Pvirgatum_Pavir.1KG016000.1 Pavir.1KG016000.1 |
High | No | 485 | OG0275325 | Get ORF Coding potential... Type: noncoding Potential: -0.554 Folding energies... MFEI: -32.144 AMFE: -0.602 GC content %: 53.402 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
