Rchinensis RchiOBHm CPg0501791

From GreeNC

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Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Assembly Species Details

[ RchiOBHm_CPg0501791]
Pt 17346 18003 v2 Rosa chinensis (Ensembl Plants 51)

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Orthologous group Sequence Details

Low No 604 OG0305805
Coding potential...
Type: noncoding Potential: -0.388
Folding energies...
MFEI: -26.258 AMFE: -0.608
GC content
%: 43.212

Matches to external databases

The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias Database Version Hit Evalue
Rchinensis_PRQ15674  SwissProt 2021-04-01 P12195 1.02e-16
Rchinensis_PRQ15674  RepBase (RepeatMasker) 2014-01-31 LTR/Copia

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).