Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Spurpurea_SapurV1A.0001s2750 [ SapurV1A.0001s2750] |
chr06 | 5612810 | 5615922 | v1 | Salix purpurea (Phytozome 13) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Spurpurea_SapurV1A.0001s2750.2 SapurV1A.0001s2750.2 |
High | No | 681 | OG0014425 | Get ORF Coding potential... Type: noncoding Potential: -0.699 Folding energies... MFEI: -25.888 AMFE: -0.689 GC content %: 37.592 | |
Spurpurea_SapurV1A.0001s2750.3 SapurV1A.0001s2750.3 |
High | No | 998 | OG0014425 | Get ORF Coding potential... Type: noncoding Potential: -0.794 Folding energies... MFEI: -24.359 AMFE: -0.670 GC content %: 36.373 | |
Spurpurea_SapurV1A.0001s2750.4 SapurV1A.0001s2750.4 |
High | No | 746 | OG0014425 | Get ORF Coding potential... Type: noncoding Potential: -0.724 Folding energies... MFEI: -25.818 AMFE: -0.678 GC content %: 38.070 | |
Spurpurea_SapurV1A.0001s2750.5 SapurV1A.0001s2750.5 |
High | No | 598 | OG0014425 | Get ORF Coding potential... Type: noncoding Potential: -0.663 Folding energies... MFEI: -26.472 AMFE: -0.682 GC content %: 38.796 |