GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Spurpurea_SapurV1A.0001s2750 [ SapurV1A.0001s2750]	chr06	5612810	5615922	v1	Salix purpurea (Phytozome 13)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Spurpurea_SapurV1A.0001s2750.2 SapurV1A.0001s2750.2	High	No	681	OG0014425		Get ORF Coding potential... Type: noncoding Potential: -0.699 Folding energies... MFEI: -25.888 AMFE: -0.689 GC content %: 37.592
Spurpurea_SapurV1A.0001s2750.3 SapurV1A.0001s2750.3	High	No	998	OG0014425		Get ORF Coding potential... Type: noncoding Potential: -0.794 Folding energies... MFEI: -24.359 AMFE: -0.670 GC content %: 36.373
Spurpurea_SapurV1A.0001s2750.4 SapurV1A.0001s2750.4	High	No	746	OG0014425		Get ORF Coding potential... Type: noncoding Potential: -0.724 Folding energies... MFEI: -25.818 AMFE: -0.678 GC content %: 38.070
Spurpurea_SapurV1A.0001s2750.5 SapurV1A.0001s2750.5	High	No	598	OG0014425		Get ORF Coding potential... Type: noncoding Potential: -0.663 Folding energies... MFEI: -26.472 AMFE: -0.682 GC content %: 38.796

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).