Gene

Acoerulea Aquca 037 00241

From GreeNC


Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Source Assembly Species Details

Acoerulea_Aquca_037_00241
Aquca_037_00241
scaffold_37 1834507 1835011 Phytozome [[Species:|]]"Species:" cannot be used as a page name in this wiki.
Coding?
No


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Sequence Details

Acoerulea_Aquca_037_00241.1
Aquca_037_00241.1
PAC:22040359
Low No 505
Coding potential...
Type: noncoding Potential: -0.528
Folding energies...
MFEI: -25.644 AMFE: -0.632
GC content
%: 40.594


Matches to external databases
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The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias Database Version Hit Evalue
Acoerulea_Aquca_037_00241.1  SwissProt 2015-06-01 Q9SJZ3 8.0e-7


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

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