GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Acoerulea_Aquca_047_00057 Aquca_047_00057	scaffold_47	1042650	1048208	Phytozome		[[Species:|]]"Species:" cannot be used as a page name in this wiki.	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Acoerulea_Aquca_047_00057.1 Aquca_047_00057.1 PAC:22064028	High	No	651		Get ORF Coding potential... Type: noncoding Potential: -1.062 Folding energies... MFEI: -23.717 AMFE: -0.613 GC content %: 38.710
Acoerulea_Aquca_047_00057.2 Aquca_047_00057.2 PAC:22064026	High	No	610		Get ORF Coding potential... Type: noncoding Potential: -1.079 Folding energies... MFEI: -23.295 AMFE: -0.602 GC content %: 38.689
Acoerulea_Aquca_047_00057.3 Aquca_047_00057.3 PAC:22064027	High	No	615		Get ORF Coding potential... Type: noncoding Potential: -0.980 Folding energies... MFEI: -23.496 AMFE: -0.605 GC content %: 38.862
Acoerulea_Aquca_047_00057.4 Aquca_047_00057.4 PAC:22064025	High	No	709		Get ORF Coding potential... Type: noncoding Potential: -1.117 Folding energies... MFEI: -23.004 AMFE: -0.642 GC content %: 35.825

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).