GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Acoerulea_Aquca_049_00162 Aquca_049_00162	scaffold_49	1296357	1298468	Phytozome		[[Species:|]]"Species:" cannot be used as a page name in this wiki.	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Acoerulea_Aquca_049_00162.1 Aquca_049_00162.1 PAC:22044567	High	No	556		Get ORF Coding potential... Type: noncoding Potential: -1.089 Folding energies... MFEI: -22.338 AMFE: -0.578 GC content %: 38.669
Acoerulea_Aquca_049_00162.2 Aquca_049_00162.2 PAC:22044568	High	No	721		Get ORF Coding potential... Type: noncoding Potential: -1.154 Folding energies... MFEI: -23.232 AMFE: -0.627 GC content %: 37.032

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).