GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Acoerulea_Aquca_058_00105 Aquca_058_00105	scaffold_58	650469	651011	Phytozome		[[Species:|]]"Species:" cannot be used as a page name in this wiki.	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Acoerulea_Aquca_058_00105.1 Aquca_058_00105.1 PAC:22051231	High	No	454		Get ORF Coding potential... Type: noncoding Potential: -0.802 Folding energies... MFEI: -24.207 AMFE: -0.621 GC content %: 38.987
Acoerulea_Aquca_058_00105.2 Aquca_058_00105.2 PAC:22051232	High	No	430		Get ORF Coding potential... Type: noncoding Potential: -0.792 Folding energies... MFEI: -23.884 AMFE: -0.619 GC content %: 38.605

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).