GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Acoerulea_Aquca_066_00036 Aquca_066_00036	scaffold_66	585898	588829	Phytozome		[[Species:|]]"Species:" cannot be used as a page name in this wiki.	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Acoerulea_Aquca_066_00036.1 Aquca_066_00036.1 PAC:22032777	High	No	472		Get ORF Coding potential... Type: noncoding Potential: -0.987 Folding energies... MFEI: -26.441 AMFE: -0.653 GC content %: 40.466
Acoerulea_Aquca_066_00036.2 Aquca_066_00036.2 PAC:22032778	High	No	482		Get ORF Coding potential... Type: noncoding Potential: -1.053 Folding energies... MFEI: -28.112 AMFE: -0.698 GC content %: 40.249

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).