Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Acoerulea_Aquca_076_00003 Aquca_076_00003 |
scaffold_76 | 11790 | 14838 | Phytozome | [[Species:|]]"Species:" cannot be used as a page name in this wiki. | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Acoerulea_Aquca_076_00003.1 Aquca_076_00003.1 PAC:22031051 |
High | No | 902 | Get ORF Coding potential... Type: noncoding Potential: -1.006 Folding energies... MFEI: -27.073 AMFE: -0.646 GC content %: 41.907 | |
Acoerulea_Aquca_076_00003.2 Aquca_076_00003.2 PAC:22031052 |
High | No | 564 | Get ORF Coding potential... Type: noncoding Potential: -1.040 Folding energies... MFEI: -24.982 AMFE: -0.590 GC content %: 42.376 | |
Acoerulea_Aquca_076_00003.3 Aquca_076_00003.3 PAC:22031053 |
High | No | 1822 | Get ORF Coding potential... Type: noncoding Potential: -1.140 Folding energies... MFEI: -24.577 AMFE: -0.633 GC content %: 38.804 |