GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Acoerulea_Aquca_083_00006 Aquca_083_00006	scaffold_83	55829	59596	Phytozome		[[Species:|]]"Species:" cannot be used as a page name in this wiki.	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Acoerulea_Aquca_083_00006.1 Aquca_083_00006.1 PAC:22058347	High	No	1118		Get ORF Coding potential... Type: noncoding Potential: -1.123 Folding energies... MFEI: -25.519 AMFE: -0.633 GC content %: 40.340
Acoerulea_Aquca_083_00006.2 Aquca_083_00006.2 PAC:22058348	High	No	739		Get ORF Coding potential... Type: noncoding Potential: -1.060 Folding energies... MFEI: -25.832 AMFE: -0.636 GC content %: 40.595

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).