Gene

Acoerulea Aquca 102 00020

From GreeNC


Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Source Assembly Species Details

Acoerulea_Aquca_102_00020
Aquca_102_00020
scaffold_102 177011 182086 Phytozome [[Species:|]]"Species:" cannot be used as a page name in this wiki.
Coding?
No


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Sequence Details

Acoerulea_Aquca_102_00020.1
Aquca_102_00020.1
PAC:22039058
High No 612
Coding potential...
Type: noncoding Potential: -0.689
Folding energies...
MFEI: -23.301 AMFE: -0.617
GC content
%: 37.745
Acoerulea_Aquca_102_00020.2
Aquca_102_00020.2
PAC:22039059
High No 543
Coding potential...
Type: noncoding Potential: -0.654
Folding energies...
MFEI: -25.359 AMFE: -0.650
GC content
%: 39.042


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

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