GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ahalleri_Araha.13692s0004 Araha.13692s0004	Scaffold13692	18511	20705	Phytozome		[[Species:|]]"Species:" cannot be used as a page name in this wiki.	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ahalleri_Araha.13692s0004.1 Araha.13692s0004.1 PAC:28846684	High	No	760		Get ORF Coding potential... Type: noncoding Potential: -1.039 Folding energies... MFEI: -23.541 AMFE: -0.598 GC content %: 39.342
Ahalleri_Araha.13692s0004.2 Araha.13692s0004.2 PAC:28846685	High	No	683		Get ORF Coding potential... Type: noncoding Potential: -1.008 Folding energies... MFEI: -25.578 AMFE: -0.642 GC content %: 39.824

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).