Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Athaliana_AT1G01046 AT1G01046 |
Chr1 | 28500 | 28706 | Phytozome | TAIR10 | Arabidopsis_thaliana | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Athaliana_AT1G01046.1 AT1G01046.1 |
Low | Yes | 207 | Get ORF Coding potential... Type: noncoding Potential: -1.080 Folding energies... MFEI: -38.744 AMFE: -1.028 GC content %: 37.681 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Athaliana_AT1G01046.1 | miRBase | 20.0 | ath-miR838 | 1.0e-5 |
Athaliana_AT1G01046.1 | miRBase | 20.0 | aly-miR838-3p | 5.0e-4 |
Athaliana_AT1G01046.1 | miRBase | 20.0 | aly-miR838-5p | 0.002 |
Athaliana_AT1G01046.1 | Rfam | 11.0 | MIR164 | 1.3e-6 |