GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Athaliana_AT1G01448 AT1G01448	Chr1	163376	166344	Phytozome	TAIR10	Arabidopsis_thaliana	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Athaliana_AT1G01448.1 AT1G01448.1	High	No	2119		Get ORF Coding potential... Type: noncoding Potential: -0.995 Folding energies... MFEI: -25.512 AMFE: -0.573 GC content %: 44.502
Athaliana_AT1G01448.2 AT1G01448.2	High	No	1034		Get ORF Coding potential... Type: noncoding Potential: -0.935 Folding energies... MFEI: -26.692 AMFE: -0.607 GC content %: 44.003
Athaliana_AT1G01448.3 AT1G01448.3	High	No	652		Get ORF Coding potential... Type: noncoding Potential: -1.050 Folding energies... MFEI: -25.782 AMFE: -0.549 GC content %: 46.932

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).