Gene

Athaliana AT1G01471

From GreeNC


Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Source Assembly Species Details

Athaliana_AT1G01471
AT1G01471
Chr1 173251 173466 Phytozome TAIR10 Arabidopsis_thaliana
Coding?
No


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Sequence Details

Athaliana_AT1G01471.1
AT1G01471.1
PAC:19657188
High No 216
Coding potential...
Type: noncoding Potential: -1.116
Folding energies...
MFEI: -24.676 AMFE: -0.544
GC content
%: 45.370


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

AT1G01471.png