Gene

Athaliana AT4G06701

From GreeNC


Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Source Assembly Species Details

Athaliana_AT4G06701
AT4G06701
Chr4 3939266 3940797 Phytozome TAIR10 Arabidopsis_thaliana
Coding?
No


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Sequence Details

Athaliana_AT4G06701.1
AT4G06701.1
High No 508
Coding potential...
Type: noncoding Potential: -1.231
Folding energies...
MFEI: -24.173 AMFE: -0.558
GC content
%: 43.307
Athaliana_AT4G06701.2
AT4G06701.2
High No 655
Coding potential...
Type: noncoding Potential: -1.313
Folding energies...
MFEI: -23.710 AMFE: -0.588
GC content
%: 40.305
Athaliana_AT4G06701.3
AT4G06701.3
High No 637
Coding potential...
Type: noncoding Potential: -1.310
Folding energies...
MFEI: -23.799 AMFE: -0.602
GC content
%: 39.560
Athaliana_AT4G06701.4
AT4G06701.4
High No 511
Coding potential...
Type: noncoding Potential: -1.232
Folding energies...
MFEI: -24.188 AMFE: -0.562
GC content
%: 43.052
Athaliana_AT4G06701.5
AT4G06701.5
High No 596
Coding potential...
Type: noncoding Potential: -1.185
Folding energies...
MFEI: -21.997 AMFE: -0.578
GC content
%: 38.087


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

AT4G06701.png