Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Athaliana_AT5G01015 AT5G01015 |
Chr5 | 5256 | 5891 | Phytozome | TAIR10 | Arabidopsis_thaliana | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Athaliana_AT5G01015.1 AT5G01015.1 PAC:19666270 |
Low | No | 516 | Get ORF Coding potential... Type: noncoding Potential: -0.794 Folding energies... MFEI: -29.787 AMFE: -0.657 GC content %: 45.349 | |
Athaliana_AT5G01015.2 AT5G01015.2 PAC:19666271 |
High | No | 325 | Get ORF Coding potential... Type: noncoding Potential: -0.938 Folding energies... MFEI: -31.138 AMFE: -0.617 GC content %: 50.462 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Athaliana_AT5G01015.1 | RepBase (RepeatMasker) | 2014-01-31 | TSCL |