GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Athaliana_AT5G01215 AT5G01215	Chr5	84307	86215	Phytozome	TAIR10	Arabidopsis_thaliana	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Athaliana_AT5G01215.1 AT5G01215.1	High	No	1516		Get ORF Coding potential... Type: noncoding Potential: -1.022 Folding energies... MFEI: -31.702 AMFE: -0.635 GC content %: 49.934
Athaliana_AT5G01215.2 AT5G01215.2	High	No	1480		Get ORF Coding potential... Type: noncoding Potential: -1.019 Folding energies... MFEI: -29.932 AMFE: -0.614 GC content %: 48.783

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).