GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Bdistachyon_Bradi4g38012 Bradi4g38012	Bd4	42925646	42932744	Phytozome	v3.1	Brachypodium_distachyon	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Bdistachyon_Bradi4g38012.2 Bradi4g38012.2 PAC:32783120	High	No	760		Get ORF Coding potential... Type: noncoding Potential: -0.953 Folding energies... MFEI: -30.355 AMFE: -0.665 GC content %: 45.658
Bdistachyon_Bradi4g38012.3 Bradi4g38012.3 PAC:32783122	High	No	499		Get ORF Coding potential... Type: noncoding Potential: -0.901 Folding energies... MFEI: -30.180 AMFE: -0.627 GC content %: 48.096

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).