GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Cclementina_Ciclev10023184m.g Ciclev10023184m.g	scaffold_3	2942913	2944293	Phytozome	v1.0	Citrus_clementina	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Cclementina_Ciclev10023179m Ciclev10023179m PAC:20807836	High	No	705		Get ORF Coding potential... Type: noncoding Potential: -0.023 Folding energies... MFEI: -25.433 AMFE: -0.640 GC content %: 39.716
Cclementina_Ciclev10023182m Ciclev10023182m PAC:20807837	High	No	704		Get ORF Coding potential... Type: noncoding Potential: -0.025 Folding energies... MFEI: -25.398 AMFE: -0.632 GC content %: 40.199
Cclementina_Ciclev10023184m Ciclev10023184m PAC:20807835	High	No	724		Get ORF Coding potential... Type: noncoding Potential: -0.031 Folding energies... MFEI: -25.552 AMFE: -0.642 GC content %: 39.779
Cclementina_Ciclev10023185m Ciclev10023185m PAC:20807838	High	No	765		Get ORF Coding potential... Type: noncoding Potential: -0.044 Folding energies... MFEI: -24.471 AMFE: -0.641 GC content %: 38.170

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).