Gene

Cpapaya evm.TU.supercontig 1770.1

From GreeNC


Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Source Assembly Species Details

Cpapaya_evm.TU.supercontig_1770.1
evm.TU.supercontig_1770.1
supercontig_1770 6644 6844 Phytozome ASGPBv0.4 Carica_papaya
Coding?
No


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Sequence Details

Cpapaya_evm.model.supercontig_1770.1
evm.model.supercontig_1770.1
PAC:16411131
Low No 201
Coding potential...
Type: noncoding Potential: -0.097
Folding energies...
MFEI: -24.925 AMFE: -0.563
GC content
%: 44.279


Matches to external databases
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The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias Database Version Hit Evalue
Cpapaya_evm.model.supercontig_1770.1  SwissProt 2015-06-01 Q1PFB9 4.0e-15


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

evm.TU.supercontig_1770.1.png