GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Creinhardtii_Cre04.g212350 Cre04.g212350	chromosome_4	1738270	1740681	Phytozome	v5.5	Chlamydomonas_reinhardtii	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Creinhardtii_Cre04.g212350.t1.2 Cre04.g212350.t1.2 PAC:30791385	Low	Yes	1592		Get ORF Coding potential... Type: noncoding Potential: -1.006 Folding energies... MFEI: -41.778 AMFE: -0.702 GC content %: 59.485

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).