GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Crubella_Carubv10007872m.g Carubv10007872m.g	scaffold_7	12136430	12137932	Phytozome	v1.0	Capsella_rubella	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Crubella_Carubv10007867m Carubv10007867m PAC:20894381	High	No	680		Get ORF Coding potential... Type: noncoding Potential: -1.174 Folding energies... MFEI: -20.221 AMFE: -0.479 GC content %: 42.206
Crubella_Carubv10007872m Carubv10007872m PAC:20894380	High	No	705		Get ORF Coding potential... Type: noncoding Potential: -1.181 Folding energies... MFEI: -19.702 AMFE: -0.466 GC content %: 42.270

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).