GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Crubella_Carubv10010707m.g Carubv10010707m.g	scaffold_1	10019040	10019642	Phytozome	v1.0	Capsella_rubella	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Crubella_Carubv10010707m Carubv10010707m PAC:20893273	High	No	603		Get ORF Coding potential... Type: noncoding Potential: -0.839 Folding energies... MFEI: -22.471 AMFE: -0.507 GC content %: 44.279

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).