Gene

Csinensis orange1.1g029778m.g

From GreeNC


Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Source Assembly Species Details

Csinensis_orange1.1g029778m.g
orange1.1g029778m.g
scaffold00005 2365944 2369208 Phytozome v1.1 Citrus_sinensis
Coding?
Yes


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Sequence Details

Csinensis_orange1.1g033802m
orange1.1g033802m
PAC:18097104
High No 1840
Coding potential...
Type: noncoding Potential: -1.033
Folding energies...
MFEI: -24.179 AMFE: -0.644
GC content
%: 37.554


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

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