Gene

Csinensis orange1.1g034140m.g

From GreeNC


Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Source Assembly Species Details

Csinensis_orange1.1g034140m.g
orange1.1g034140m.g
scaffold00050 567789 568462 Phytozome v1.1 Citrus_sinensis
Coding?
No


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Sequence Details

Csinensis_orange1.1g034140m
orange1.1g034140m
PAC:18105399
Low No 571
Coding potential...
Type: noncoding Potential: -0.144
Folding energies...
MFEI: -21.541 AMFE: -0.517
GC content
%: 41.681


Matches to external databases
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The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias Database Version Hit Evalue
Csinensis_orange1.1g034140m  SwissProt 2015-06-01 Q5BJP5 6.0e-14


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

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