GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Egrandis_Eucgr.A00201 Eucgr.A00201	Chr01	7880434	7883112	Phytozome	v2.0	Eucalyptus_grandis	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Egrandis_Eucgr.A00201.1 Eucgr.A00201.1 PAC:32048532	High	No	595		Get ORF Coding potential... Type: noncoding Potential: -0.719 Folding energies... MFEI: -28.622 AMFE: -0.615 GC content %: 46.555
Egrandis_Eucgr.A00201.2 Eucgr.A00201.2 PAC:32048533	High	No	678		Get ORF Coding potential... Type: noncoding Potential: -0.590 Folding energies... MFEI: -29.056 AMFE: -0.627 GC content %: 46.313

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).