Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Graimondii_Gorai.001G000300 Gorai.001G000300 |
Chr01 | 7492 | 12104 | Phytozome | v2.1 | Gossypium_raimondii | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Graimondii_Gorai.001G000300.1 Gorai.001G000300.1 PAC:26823939 |
Low | No | 587 | Get ORF Coding potential... Type: noncoding Potential: -0.666 Folding energies... MFEI: -22.470 AMFE: -0.569 GC content %: 39.523 | |
Graimondii_Gorai.001G000300.2 Gorai.001G000300.2 PAC:26823940 |
Low | No | 440 | Get ORF Coding potential... Type: noncoding Potential: -0.525 Folding energies... MFEI: -22.068 AMFE: -0.546 GC content %: 40.455 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Graimondii_Gorai.001G000300.2 | SwissProt | 2015-06-01 | Q5EAR5 | 4.0e-14 |
Graimondii_Gorai.001G000300.1 | SwissProt | 2015-06-01 | Q5EAR5 | 9.0e-14 |