Gene

Graimondii Gorai.001G000300

From GreeNC


Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Source Assembly Species Details

Graimondii_Gorai.001G000300
Gorai.001G000300
Chr01 7492 12104 Phytozome v2.1 Gossypium_raimondii
Coding?
No


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Sequence Details

Graimondii_Gorai.001G000300.1
Gorai.001G000300.1
PAC:26823939
Low No 587
Coding potential...
Type: noncoding Potential: -0.666
Folding energies...
MFEI: -22.470 AMFE: -0.569
GC content
%: 39.523
Graimondii_Gorai.001G000300.2
Gorai.001G000300.2
PAC:26823940
Low No 440
Coding potential...
Type: noncoding Potential: -0.525
Folding energies...
MFEI: -22.068 AMFE: -0.546
GC content
%: 40.455


Matches to external databases
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The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias Database Version Hit Evalue
Graimondii_Gorai.001G000300.1  SwissProt 2015-06-01 Q5EAR5 9.0e-14
Graimondii_Gorai.001G000300.2  SwissProt 2015-06-01 Q5EAR5 4.0e-14


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

Gorai.001G000300.png