Gene

Graimondii Gorai.001G000700

From GreeNC


Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Source Assembly Species Details

Graimondii_Gorai.001G000700
Gorai.001G000700
Chr01 53087 58470 Phytozome v2.1 Gossypium_raimondii
Coding?
No


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Sequence Details

Graimondii_Gorai.001G000700.1
Gorai.001G000700.1
PAC:26822018
Low No 935
Coding potential...
Type: noncoding Potential: -1.086
Folding energies...
MFEI: -24.513 AMFE: -0.633
GC content
%: 38.717
Graimondii_Gorai.001G000700.2
Gorai.001G000700.2
PAC:26822017
Low No 378
Coding potential...
Type: noncoding Potential: -0.864
Folding energies...
MFEI: -22.725 AMFE: -0.577
GC content
%: 39.418


Matches to external databases
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The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias Database Version Hit Evalue
Graimondii_Gorai.001G000700.1  RepBase (RepeatMasker) 2014-01-31 DEM1_LTR
Graimondii_Gorai.001G000700.2  RepBase (RepeatMasker) 2014-01-31 DEM1_LTR


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

Gorai.001G000700.png