Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Graimondii_Gorai.001G000700 Gorai.001G000700 |
Chr01 | 53087 | 58470 | Phytozome | v2.1 | Gossypium_raimondii | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Graimondii_Gorai.001G000700.1 Gorai.001G000700.1 PAC:26822018 |
Low | No | 935 | Get ORF Coding potential... Type: noncoding Potential: -1.086 Folding energies... MFEI: -24.513 AMFE: -0.633 GC content %: 38.717 | |
Graimondii_Gorai.001G000700.2 Gorai.001G000700.2 PAC:26822017 |
Low | No | 378 | Get ORF Coding potential... Type: noncoding Potential: -0.864 Folding energies... MFEI: -22.725 AMFE: -0.577 GC content %: 39.418 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Graimondii_Gorai.001G000700.2 | RepBase (RepeatMasker) | 2014-01-31 | DEM1_LTR | |
Graimondii_Gorai.001G000700.1 | RepBase (RepeatMasker) | 2014-01-31 | DEM1_LTR |