Gene

Graimondii Gorai.001G003800

From GreeNC


Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Source Assembly Species Details

Graimondii_Gorai.001G003800
Gorai.001G003800
Chr01 356125 358380 Phytozome v2.1 Gossypium_raimondii
Coding?
Yes


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Sequence Details

Graimondii_Gorai.001G003800.2
Gorai.001G003800.2
PAC:26822335
Low No 799
Coding potential...
Type: noncoding Potential: -0.482
Folding energies...
MFEI: -23.354 AMFE: -0.637
GC content
%: 36.671


Matches to external databases
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The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias Database Version Hit Evalue
Graimondii_Gorai.001G003800.2  SwissProt 2015-06-01 Q94BT9 4.0e-9


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

Gorai.001G003800.png