GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Graimondii_Gorai.001G036100 Gorai.001G036100	Chr01	3321655	3323883	Phytozome	v2.1	Gossypium_raimondii	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Graimondii_Gorai.001G036100.1 Gorai.001G036100.1 PAC:26823381	High	No	1230		Get ORF Coding potential... Type: noncoding Potential: -1.110 Folding energies... MFEI: -24.911 AMFE: -0.652 GC content %: 38.211
Graimondii_Gorai.001G036100.2 Gorai.001G036100.2 PAC:26823382	High	No	1326		Get ORF Coding potential... Type: noncoding Potential: -1.119 Folding energies... MFEI: -24.932 AMFE: -0.665 GC content %: 37.481
Graimondii_Gorai.001G036100.3 Gorai.001G036100.3 PAC:26823383	High	No	688		Get ORF Coding potential... Type: noncoding Potential: -0.863 Folding energies... MFEI: -27.413 AMFE: -0.691 GC content %: 39.680

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).