GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Klaxiflora_Kalax.0485s0013 Kalax.0485s0013	scaffold_485	71187	72812	Phytozome		[[Species:|]]"Species:" cannot be used as a page name in this wiki.	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Klaxiflora_Kalax.0485s0013.1 Kalax.0485s0013.1 PAC:32595274	High	No	1548		Get ORF Coding potential... Type: noncoding Potential: -1.155 Folding energies... MFEI: -27.016 AMFE: -0.651 GC content %: 41.473
Klaxiflora_Kalax.0485s0013.2 Kalax.0485s0013.2 PAC:32595275	High	No	1299		Get ORF Coding potential... Type: noncoding Potential: -1.236 Folding energies... MFEI: -27.159 AMFE: -0.633 GC content %: 42.879

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).