Gene

Mdomestica MDP0000835496

From GreeNC


Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Source Assembly Species Details

Mdomestica_MDP0000835496
MDP0000835496
MDC022052.266 2726 2947 Phytozome v1.0 Malus_domestica
Coding?
No


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Sequence Details

Mdomestica_MDP0000835496
MDP0000835496
PAC:22659705
High No 222
Coding potential...
Type: noncoding Potential: -0.652
Folding energies...
MFEI: -27.207 AMFE: -0.575
GC content
%: 47.297


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

MDP0000835496.png