GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Mguttatus_Migut.B00213 Migut.B00213	scaffold_2	906723	910577	Phytozome	v2.0	Mimulus_guttatus	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Mguttatus_Migut.B00213.1 Migut.B00213.1 PAC:28946216	High	No	1392		Get ORF Coding potential... Type: noncoding Potential: -0.987 Folding energies... MFEI: -21.085 AMFE: -0.591 GC content %: 35.704
Mguttatus_Migut.B00213.2 Migut.B00213.2 PAC:28946217	High	No	726		Get ORF Coding potential... Type: noncoding Potential: -0.728 Folding energies... MFEI: -22.851 AMFE: -0.666 GC content %: 34.298

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).