Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Ppatens_Pp3c13_15160 Pp3c13_15160 |
Chr13 | 11076324 | 11078303 | Phytozome | v3.3 | Physcomitrella_patens | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Ppatens_Pp3c13_15160V3.1 Pp3c13_15160V3.1 PAC:32930796 |
Low | No | 1299 | Get ORF Coding potential... Type: noncoding Potential: -0.268 Folding energies... MFEI: -27.206 AMFE: -0.620 GC content %: 43.880 | |
Ppatens_Pp3c13_15160V3.2 Pp3c13_15160V3.2 PAC:32930797 |
Low | No | 1001 | Get ORF Coding potential... Type: noncoding Potential: -0.191 Folding energies... MFEI: -26.883 AMFE: -0.653 GC content %: 41.159 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Ppatens_Pp3c13_15160V3.1 | SwissProt | 2015-06-01 | Q9T070 | 7.0e-13 |
Ppatens_Pp3c13_15160V3.2 | SwissProt | 2015-06-01 | Q9T070 | 3.0e-13 |