GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3c14_18850 Pp3c14_18850	Chr14	12557972	12561027	Phytozome	v3.3	Physcomitrella_patens	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3c14_18850V3.1 Pp3c14_18850V3.1 PAC:32960313	High	No	1592		Get ORF Coding potential... Type: noncoding Potential: -0.954 Folding energies... MFEI: -28.926 AMFE: -0.669 GC content %: 43.216
Ppatens_Pp3c14_18850V3.2 Pp3c14_18850V3.2 PAC:32960314	High	No	2020		Get ORF Coding potential... Type: noncoding Potential: -0.984 Folding energies... MFEI: -28.827 AMFE: -0.684 GC content %: 42.129

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).