GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ppatens_Pp3c1_7550 Pp3c1_7550	Chr01	5620107	5621698	Phytozome	v3.3	Physcomitrella_patens	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ppatens_Pp3c1_7550V3.1 Pp3c1_7550V3.1 PAC:32968471	High	No	1559		Get ORF Coding potential... Type: noncoding Potential: -1.312 Folding energies... MFEI: -29.384 AMFE: -0.703 GC content %: 41.822
Ppatens_Pp3c1_7550V3.2 Pp3c1_7550V3.2 PAC:32968472	High	No	1592		Get ORF Coding potential... Type: noncoding Potential: -1.313 Folding energies... MFEI: -29.604 AMFE: -0.713 GC content %: 41.520

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).