Gene
Ppatens Pp3c4 23339
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Ppatens_Pp3c4_23339 Pp3c4_23339 |
Chr04 | 15808527 | 15810875 | Phytozome | v3.3 | Physcomitrella_patens | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Ppatens_Pp3c4_23339V3.1 Pp3c4_23339V3.1 PAC:32922658 |
High | No | 1053 | Get ORF Coding potential... Type: noncoding Potential: -1.126 Folding energies... MFEI: -23.516 AMFE: -0.625 GC content %: 37.607 | |
| Ppatens_Pp3c4_23339V3.2 Pp3c4_23339V3.2 PAC:32922659 |
High | No | 1071 | Get ORF Coding potential... Type: noncoding Potential: -1.129 Folding energies... MFEI: -23.979 AMFE: -0.637 GC content %: 37.628 | |
| Ppatens_Pp3c4_23339V3.3 Pp3c4_23339V3.3 PAC:32922660 |
High | No | 1286 | Get ORF Coding potential... Type: noncoding Potential: -1.158 Folding energies... MFEI: -24.185 AMFE: -0.630 GC content %: 38.414 | |
| Ppatens_Pp3c4_23339V3.4 Pp3c4_23339V3.4 PAC:32922661 |
High | No | 1291 | Get ORF Coding potential... Type: noncoding Potential: -1.158 Folding energies... MFEI: -24.301 AMFE: -0.631 GC content %: 38.497 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
