GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ptrichocarpa_Potri.001G001800 Potri.001G001800	Chr01	124909	127145	Phytozome	v3.0	Populus_trichocarpa	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ptrichocarpa_Potri.001G001800.1 Potri.001G001800.1 PAC:27041150	High	No	1299		Get ORF Coding potential... Type: noncoding Potential: -1.299 Folding energies... MFEI: -27.190 AMFE: -0.682 GC content %: 39.877
Ptrichocarpa_Potri.001G001800.2 Potri.001G001800.2 PAC:27041151	High	No	1169		Get ORF Coding potential... Type: noncoding Potential: -0.956 Folding energies... MFEI: -27.399 AMFE: -0.667 GC content %: 41.061

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).