GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ptrichocarpa_Potri.001G002100 Potri.001G002100	Chr01	132600	139596	Phytozome	v3.0	Populus_trichocarpa	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ptrichocarpa_Potri.001G002100.1 Potri.001G002100.1 PAC:27046658	High	No	699		Get ORF Coding potential... Type: noncoding Potential: -1.219 Folding energies... MFEI: -19.742 AMFE: -0.502 GC content %: 39.342
Ptrichocarpa_Potri.001G002100.2 Potri.001G002100.2 PAC:27046659	High	No	405		Get ORF Coding potential... Type: noncoding Potential: -1.128 Folding energies... MFEI: -17.481 AMFE: -0.466 GC content %: 37.531

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).