Gene

Ptrichocarpa Potri.001G008100

From GreeNC


Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Source Assembly Species Details

Ptrichocarpa_Potri.001G008100
Potri.001G008100
Chr01 546732 547189 Phytozome v3.0 Populus_trichocarpa
Coding?
No


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Sequence Details

Ptrichocarpa_Potri.001G008100.1
Potri.001G008100.1
PAC:27048164
High No 458
Coding potential...
Type: noncoding Potential: -0.945
Folding energies...
MFEI: -22.314 AMFE: -0.568
GC content
%: 39.301


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

Potri.001G008100.png