GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Ptrichocarpa_Potri.001G016100 Potri.001G016100	Chr01	1171773	1172764	Phytozome	v3.0	Populus_trichocarpa	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Ptrichocarpa_Potri.001G016100.1 Potri.001G016100.1 PAC:27043337	High	No	342		Get ORF Coding potential... Type: noncoding Potential: -0.491 Folding energies... MFEI: -20.526 AMFE: -0.498 GC content %: 41.228
Ptrichocarpa_Potri.001G016100.2 Potri.001G016100.2 PAC:27043338	High	No	704		Get ORF Coding potential... Type: noncoding Potential: -0.738 Folding energies... MFEI: -22.429 AMFE: -0.600 GC content %: 37.358

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).