Gene

Pvirgatum Pavir.Ca00166

From GreeNC


Gene information
Help.png

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Source Assembly Species Details

Pvirgatum_Pavir.Ca00166
Pavir.Ca00166
Chr03a 2069541 2070636 Phytozome [[Species:|]]"Species:" cannot be used as a page name in this wiki.
Coding?
No


Transcript features
Help.png

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Sequence Details

Pvirgatum_Pavir.Ca00166.1
Pavir.Ca00166.1
PAC:30204929
High No 709
Coding potential...
Type: noncoding Potential: -0.937
Folding energies...
MFEI: -32.835 AMFE: -0.658
GC content
%: 49.929


Gene models
Help.png

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

Pavir.Ca00166.png