GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Sitalica_Seita.1G027500 Seita.1G027500	scaffold_1	2482423	2487163	Phytozome	v2.2	Setaria_italica	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Sitalica_Seita.1G027500.1 Seita.1G027500.1 PAC:32695512	High	No	811		Get ORF Coding potential... Type: noncoding Potential: -0.926 Folding energies... MFEI: -35.993 AMFE: -0.653 GC content %: 55.117
Sitalica_Seita.1G027500.2 Seita.1G027500.2 PAC:32695513	Low	Yes	744		Get ORF Coding potential... Type: noncoding Potential: -0.838 Folding energies... MFEI: -36.667 AMFE: -0.661 GC content %: 55.511

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).