GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Stuberosum_PGSC0003DMG400010553 PGSC0003DMG400010553	chr10	3027532	3028775	Phytozome	v3.4	Solanum_tuberosum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Stuberosum_PGSC0003DMT400027367 PGSC0003DMT400027367 PAC:24411348	High	No	219		Get ORF Coding potential... Type: noncoding Potential: -0.350 Folding energies... MFEI: -19.361 AMFE: -0.466 GC content %: 41.553
Stuberosum_PGSC0003DMT400027369 PGSC0003DMT400027369 PAC:24411347	High	No	601		Get ORF Coding potential... Type: noncoding Potential: -0.805 Folding energies... MFEI: -24.626 AMFE: -0.673 GC content %: 36.606
Stuberosum_PGSC0003DMT400027370 PGSC0003DMT400027370 PAC:24411349	Low	Yes	868		Get ORF Coding potential... Type: noncoding Potential: -1.025 Folding energies... MFEI: -64.297 AMFE: -1.795 GC content %: 35.829

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).