GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Stuberosum_PGSC0003DMG400014545 PGSC0003DMG400014545	chr05	2690321	2693117	Phytozome	v3.4	Solanum_tuberosum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Stuberosum_PGSC0003DMT400037706 PGSC0003DMT400037706 PAC:24386751	High	No	2713		Get ORF Coding potential... Type: noncoding Potential: -0.816 Folding energies... MFEI: -24.924 AMFE: -0.696 GC content %: 35.827
Stuberosum_PGSC0003DMT400037708 PGSC0003DMT400037708 PAC:24386752	High	No	1704		Get ORF Coding potential... Type: noncoding Potential: -1.047 Folding energies... MFEI: -26.362 AMFE: -0.687 GC content %: 38.380

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).