Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Stuberosum_PGSC0003DMG400014545 PGSC0003DMG400014545 |
chr05 | 2690321 | 2693117 | Phytozome | v3.4 | Solanum_tuberosum | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Stuberosum_PGSC0003DMT400037706 PGSC0003DMT400037706 PAC:24386751 |
High | No | 2713 | Get ORF Coding potential... Type: noncoding Potential: -0.816 Folding energies... MFEI: -24.924 AMFE: -0.696 GC content %: 35.827 | |
Stuberosum_PGSC0003DMT400037708 PGSC0003DMT400037708 PAC:24386752 |
High | No | 1704 | Get ORF Coding potential... Type: noncoding Potential: -1.047 Folding energies... MFEI: -26.362 AMFE: -0.687 GC content %: 38.380 |