Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Stuberosum_PGSC0003DMG402009389 PGSC0003DMG402009389 |
chr07 | 46568286 | 46569877 | Phytozome | v3.4 | Solanum_tuberosum | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Stuberosum_PGSC0003DMT400024292 PGSC0003DMT400024292 PAC:24414978 |
Low | No | 1592 | Get ORF Coding potential... Type: noncoding Potential: -1.125 Folding energies... MFEI: -19.887 AMFE: -0.538 GC content %: 36.935 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Stuberosum_PGSC0003DMT400024292 | RepBase (RepeatMasker) | 2014-01-31 | SINE1_SO |